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Master Items Duplicated after update from earlier version to latest


I was using gms version 1.5 and i had inserted a lot of master items, after i upgraded to version 2, i ran the update again, and the tool duplicated everything i had.

So i deleted everything from the app using the tool and updated again.

After doing that, all the visualizations that were using master items now don't work and show 'Incomplete Visualizations'.

How can i fix this?

Thank you