Can you please elaborate? I've been connecting through terminar services (mstsc.exe) to a server and both Accesspoint and Consoles showed properly. What version of QlikView Server are you using? How is your user authenticating?
Please confirm the setup you are using, and what way you access to document.
What QlikView Server version are you running? How are you accessing the document; IE Plugin, AJAX? If you use IE Plugin, what version of plugin are you using? If you are using AJAX, which browser (including version) are you using?
Please clarify what is not presented correctly, is the data incorrect or is it a GUI issue? A screenshot would be helpful in order to evaluate what problem you have.