I'm not sure that I understand your question completely.
Why not load the master list that contains all values in as one table. Make sure that the name of the resolver group id matches the name in your JIRA file. Qlik sense will associate them automatically then.
Then use your master file list as your filter in the app. You will then see all values even if they are not in your data. That is where the white,grey,dark grey comes into play as you make selections.
Does that help at all?