You can create a separate AccessPoint page, but it would still use the same links to the server. As such, all the applications would be displayed in both.
Have you tried organizing the documents by category, or implementing security to reduce the number of applications that each user sees?
An alternative is to establish a second QVS with the documents stored centrally. Then you could have folder level control of which documents are displayed on by each server (AccessPoint). Obviously, there is a licensing/hardware and administration cost to doing this.