if you have already installed Qlikview Server (QMC), i assume you have already defined Root folders / Mount folders in the QMC. What ever the qvw files that you placed under this Root or mount folders, those qvws are considered as deployed in QV server. you can access those qvw thru access point.
Apart from root folder , as per i know i can add folders from qmc in server tab in qlikview server folder options. and ny document that i place over there will also be automatically deployed. m i right?