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On: Recovering from data folder loss or corruption there is a step where there must be a manual lookup : "After locating the relevant task, copy the value in the corresponding CHECKPOINT column."
This should be a pretty easy lookup for Replicate to do on its own and skip this manual step. This would also be helpful with API and automated recovery.
There will need to be an evaluation on the API if anything needs to be done there with the run options I would assume that we would just remove the manual entry of the checkpoint value.