Turns out since Partial Load can not be used in this case because Qualify is used throughout, that the QVD solution you mentioned above is the perfect solution. There may be some scripting around this but this will work.
That may happen usually when the table is labelled like any other previously loaded. Or it may happen because you don't use labels for tables (setting a name before the LOAD statement see my example above) and two tables in the source are named alike.
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